Package 'scoper'
| Title: |
Spectral Clustering-Based Method for Identifying B Cell Clones |
| Description: |
Provides a computational framework for identification of B
cell clones from Adaptive Immune Receptor Repertoire sequencing
(AIRR-Seq) data. Three main functions are included
(identicalClones, hierarchicalClones, and spectralClones) that
perform clustering among sequences of BCRs/IGs (B cell
receptors/immunoglobulins) which share the same V gene, J gene
and junction length. Nouri N and Kleinstein SH (2018) <doi:
10.1093/bioinformatics/bty235>. Nouri N and Kleinstein SH
(2019) <doi: 10.1101/788620>. Gupta NT, et al. (2017) <doi:
10.4049/jimmunol.1601850>. |
| Authors: |
Nima Nouri [aut],
Edel Aron [ctb],
Gisela Gabernet [ctb],
Susanna Marquez [ctb, cre],
Jason Vander Heiden [aut],
Steven Kleinstein [aut, cph] |
| Maintainer: |
Susanna Marquez <[email protected]> |
| License: |
AGPL-3 |
| Version: |
1.3.1.999 |
| Built: |
2024-11-04 20:19:06 UTC |
| Source: |
https://bitbucket.org/kleinstein/scoper |
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